Detailed information of SNP:
|
SNP ID:
sf1009944160(Gbrowse)
Chromosome: chr10 Position: 9944160 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 65.98% | 34.02% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 493 | 25.76% | 74.24% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 333 | 15.32% | 84.68% |
| Tropical Japonica | 92 | 60.87% | 39.13% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009944160 | G->A | LOC_Os10g19960(LOC_Os10g19960.1) | Synonymous |