Detailed information of SNP:
|
SNP ID:
sf1009957668(Gbrowse)
Chromosome: chr10 Position: 9957668 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 67.85% | 32.15% |
| All Indica | 785 | 90.96% | 9.04% |
| All Japonica | 496 | 27.02% | 72.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 86.23% | 13.77% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009957668 | C->T | LOC_Os10g19990(LOC_Os10g19990.1) | INTRON |