Detailed information of SNP:
|
SNP ID:
sf1009994511(Gbrowse)
Chromosome: chr10 Position: 9994511 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1256 | 88.38% | 11.62% |
| All Indica | 675 | 84.89% | 15.11% |
| All Japonica | 489 | 95.30% | 4.70% |
| Aus | 43 | 69.77% | 30.23% |
| Indica I | 317 | 88.33% | 11.67% |
| Indica II | 186 | 84.95% | 15.05% |
| Indica Intermediate | 172 | 78.49% | 21.51% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 88 | 87.50% | 12.50% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 9 | 44.44% | 55.56% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009994511 | T->C | LOC_Os10g20050(LOC_Os10g20050.1) | INTRON |