Detailed information of SNP:
|
SNP ID:
sf1009996423(Gbrowse)
Chromosome: chr10 Position: 9996423 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 93.86% | 6.14% |
| All Indica | 777 | 91.76% | 8.24% |
| All Japonica | 486 | 96.71% | 3.29% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 363 | 90.08% | 9.92% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 204 | 91.67% | 8.33% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 87.36% | 12.64% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009996423 | A->G | INTERGENIC | None |