Detailed information of SNP:
|
SNP ID:
sf1009997074(Gbrowse)
Chromosome: chr10 Position: 9997074 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 83.49% | 16.51% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 476 | 56.30% | 43.70% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 319 | 50.47% | 49.53% |
| Tropical Japonica | 90 | 85.56% | 14.44% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009997074 | A->G | INTERGENIC | None |