Detailed information of SNP:
|
SNP ID:
sf1010022463(Gbrowse)
Chromosome: chr10 Position: 10022463 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 55.48% | 44.52% |
| All Indica | 796 | 46.36% | 53.64% |
| All Japonica | 495 | 74.34% | 25.66% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 373 | 67.02% | 32.98% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 84.78% | 15.22% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010022463 | C->T | LOC_Os10g20090(LOC_Os10g20090.3) | Synonymous |
| sf1010022463 | C->T | LOC_Os10g20090(LOC_Os10g20090.2) | Synonymous |
| sf1010022463 | C->T | LOC_Os10g20090(LOC_Os10g20090.1) | Synonymous |