Detailed information of SNP:
|
SNP ID:
sf1010046984(Gbrowse)
Chromosome: chr10 Position: 10046984 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.80% | 38.20% |
| All Indica | 799 | 53.07% | 46.93% |
| All Japonica | 497 | 80.28% | 19.72% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 31.20% | 68.80% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 72.84% | 27.16% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010046984 | G->A | INTERGENIC | None |