Detailed information of SNP:
|
SNP ID:
sf1010065965(Gbrowse)
Chromosome: chr10 Position: 10065965 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1242 | 94.04% | 5.96% |
| All Indica | 715 | 93.57% | 6.43% |
| All Japonica | 427 | 95.78% | 4.22% |
| Aus | 59 | 89.83% | 10.17% |
| Indica I | 332 | 97.59% | 2.41% |
| Indica II | 191 | 92.15% | 7.85% |
| Indica Intermediate | 192 | 88.02% | 11.98% |
| Temperate Japonica | 273 | 95.24% | 4.76% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 5 | 40.00% | 60.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010065965 | A->C | LOC_Os10g20190(LOC_Os10g20190.1) | Synonymous |