Detailed information of SNP:
|
SNP ID:
sf1010075679(Gbrowse)
Chromosome: chr10 Position: 10075679 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 76.82% | 23.18% |
| All Indica | 792 | 59.97% | 40.03% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 42.82% | 57.18% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010075679 | A->G | INTERGENIC | None |