Detailed information of SNP:
|
SNP ID:
sf1010080495(Gbrowse)
Chromosome: chr10 Position: 10080495 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 87.19% | 12.81% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 491 | 64.97% | 35.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 58.38% | 41.62% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 64 | 54.69% | 45.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010080495 | A->G | LOC_Os10g20220(LOC_Os10g20220.1) | Non-Synonymous SNP |