Detailed information of SNP:
|
SNP ID:
sf1010108718(Gbrowse)
Chromosome: chr10 Position: 10108718 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.95% | 49.05% |
| All Indica | 796 | 64.45% | 35.55% |
| All Japonica | 496 | 19.96% | 80.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 72.39% | 27.61% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 335 | 18.51% | 81.49% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010108718 | G->A | INTERGENIC | None |