Detailed information of SNP:
|
SNP ID:
sf1010127047(Gbrowse)
Chromosome: chr10 Position: 10127047 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1253 | 59.94% | 40.06% |
| All Indica | 660 | 36.67% | 63.33% |
| All Japonica | 484 | 94.63% | 5.37% |
| Aus | 59 | 25.42% | 74.58% |
| Indica I | 285 | 43.86% | 56.14% |
| Indica II | 196 | 28.06% | 71.94% |
| Indica Intermediate | 179 | 34.64% | 65.36% |
| Temperate Japonica | 328 | 96.04% | 3.96% |
| Tropical Japonica | 90 | 87.78% | 12.22% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010127047 | A->G | LOC_Os10g20280(LOC_Os10g20280.1) | Non-Synonymous SNP |