Detailed information of SNP:
|
SNP ID:
sf1010184635(Gbrowse)
Chromosome: chr10 Position: 10184635 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 70.40% | 29.60% |
| All Indica | 799 | 67.08% | 32.92% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 71.47% | 28.53% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010184635 | G->A | INTERGENIC | None |