Detailed information of SNP:
|
SNP ID:
sf1010186174(Gbrowse)
Chromosome: chr10 Position: 10186174 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 88.43% | 11.57% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 496 | 82.86% | 17.14% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 84.78% | 15.22% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010186174 | T->C | INTERGENIC | None |