Detailed information of SNP:
|
SNP ID:
sf1010194265(Gbrowse)
Chromosome: chr10 Position: 10194265 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1314 | 84.93% | 15.07% |
| All Indica | 723 | 78.70% | 21.30% |
| All Japonica | 476 | 93.49% | 6.51% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 329 | 79.64% | 20.36% |
| Indica II | 199 | 81.91% | 18.09% |
| Indica Intermediate | 195 | 73.85% | 26.15% |
| Temperate Japonica | 321 | 95.02% | 4.98% |
| Tropical Japonica | 89 | 88.76% | 11.24% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010194265 | G->A | LOC_Os10g20410(LOC_Os10g20410.1) | Synonymous |