Detailed information of SNP:
|
SNP ID:
sf1010194545(Gbrowse)
Chromosome: chr10 Position: 10194545 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 72.93% | 27.07% |
| All Indica | 797 | 95.61% | 4.39% |
| All Japonica | 495 | 32.12% | 67.88% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 333 | 21.32% | 78.68% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010194545 | A->G | LOC_Os10g20410(LOC_Os10g20410.1) | Synonymous |