Detailed information of SNP:
|
SNP ID:
sf1010202826(Gbrowse)
Chromosome: chr10 Position: 10202826 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 92.13% | 7.87% |
| All Indica | 742 | 85.71% | 14.29% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 87.61% | 12.39% |
| Indica II | 197 | 87.82% | 12.18% |
| Indica Intermediate | 198 | 80.30% | 19.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010202826 | A->C | LOC_Os10g20430(LOC_Os10g20430.1) | Non-Synonymous SNP |