Detailed information of SNP:
|
SNP ID:
sf1010205573(Gbrowse)
Chromosome: chr10 Position: 10205573 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1157 | 79.08% | 20.92% |
| All Indica | 576 | 75.87% | 24.13% |
| All Japonica | 478 | 87.87% | 12.13% |
| Aus | 52 | 40.38% | 59.62% |
| Indica I | 252 | 74.21% | 25.79% |
| Indica II | 167 | 81.44% | 18.56% |
| Indica Intermediate | 157 | 72.61% | 27.39% |
| Temperate Japonica | 326 | 88.65% | 11.35% |
| Tropical Japonica | 87 | 82.76% | 17.24% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010205573 | C->T | LOC_Os10g20430(LOC_Os10g20430.1) | INTRON |