Detailed information of SNP:
|
SNP ID:
sf1010213301(Gbrowse)
Chromosome: chr10 Position: 10213301 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 97.71% | 2.29% |
| All Indica | 778 | 97.94% | 2.06% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.19% | 0.81% |
| Indica II | 202 | 95.54% | 4.46% |
| Indica Intermediate | 205 | 98.05% | 1.95% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010213301 | A->G | INTERGENIC | None |