Detailed information of SNP:
|
SNP ID:
sf1010236216(Gbrowse)
Chromosome: chr10 Position: 10236216 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 95.35% | 4.65% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010236216 | T->C | INTERGENIC | None |