Detailed information of SNP:
|
SNP ID:
sf1010277412(Gbrowse)
Chromosome: chr10 Position: 10277412 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 70.25% | 29.75% |
| All Indica | 786 | 98.22% | 1.78% |
| All Japonica | 496 | 20.97% | 79.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 98.90% | 1.10% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010277412 | A->G | INTERGENIC | None |