Detailed information of SNP:
|
SNP ID:
sf1010287731(Gbrowse)
Chromosome: chr10 Position: 10287731 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 50.18% | 49.82% |
| All Indica | 793 | 69.36% | 30.64% |
| All Japonica | 497 | 10.87% | 89.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 75.81% | 24.19% |
| Indica II | 212 | 52.36% | 47.64% |
| Indica Intermediate | 209 | 75.12% | 24.88% |
| Temperate Japonica | 335 | 14.33% | 85.67% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010287731 | A->G | INTERGENIC | None |