Detailed information of SNP:
|
SNP ID:
sf1010291305(Gbrowse)
Chromosome: chr10 Position: 10291305 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.87% | 42.13% |
| All Indica | 797 | 27.35% | 72.65% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 27.08% | 72.92% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 211 | 24.64% | 75.36% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010291305 | C->G | INTERGENIC | None |