Detailed information of SNP:
|
SNP ID:
sf1010292844(Gbrowse)
Chromosome: chr10 Position: 10292844 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 97.58% | 2.42% |
| All Indica | 784 | 96.05% | 3.95% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 96.21% | 3.79% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010292844 | A->G | INTERGENIC | None |