Detailed information of SNP:
|
SNP ID:
sf1010311781(Gbrowse)
Chromosome: chr10 Position: 10311781 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1323 | 94.10% | 5.90% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 402 | 81.09% | 18.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 250 | 72.40% | 27.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 88.14% | 11.86% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010311781 | A->C | LOC_Os10g20600(LOC_Os10g20600.1) | UTR_5_PRIME |