Detailed information of SNP:
|
SNP ID:
sf1010312022(Gbrowse)
Chromosome: chr10 Position: 10312022 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 82.26% | 17.74% |
| All Indica | 780 | 84.62% | 15.38% |
| All Japonica | 496 | 75.00% | 25.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 93.02% | 6.98% |
| Indica II | 212 | 72.17% | 27.83% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 82.99% | 17.01% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010312022 | T->C | LOC_Os10g20600(LOC_Os10g20600.1) | INTRON |