Detailed information of SNP:
|
SNP ID:
sf1010325206(Gbrowse)
Chromosome: chr10 Position: 10325206 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 93.85% | 6.15% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 1.54% | 98.46% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010325206 | C->A | LOC_Os10g20610(LOC_Os10g20610.1) | INTRON |