Detailed information of SNP:
|
SNP ID:
sf1010325866(Gbrowse)
Chromosome: chr10 Position: 10325866 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1271 | 94.89% | 5.11% |
| All Indica | 658 | 90.43% | 9.57% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 297 | 91.25% | 8.75% |
| Indica II | 175 | 86.29% | 13.71% |
| Indica Intermediate | 186 | 93.01% | 6.99% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010325866 | G->A | INTERGENIC | None |