Detailed information of SNP:
|
SNP ID:
sf1010416934(Gbrowse)
Chromosome: chr10 Position: 10416934 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 95.56% | 4.44% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 475 | 87.16% | 12.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 315 | 83.49% | 16.51% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010416934 | A->T | INTERGENIC | None |