Detailed information of SNP:
|
SNP ID:
sf1010447178(Gbrowse)
Chromosome: chr10 Position: 10447178 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 95.12% | 4.88% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 492 | 86.99% | 13.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 89 | 47.19% | 52.81% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010447178 | A->T | LOC_Os10g20750(LOC_Os10g20750.1) | Non-Synonymous SNP |