Detailed information of SNP:
|
SNP ID:
sf1010460326(Gbrowse)
Chromosome: chr10 Position: 10460326 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 95.41% | 4.59% |
| All Indica | 797 | 92.47% | 7.53% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010460326 | G->A | LOC_Os10g20770(LOC_Os10g20770.1) | Non-Synonymous SNP |