Detailed information of SNP:
|
SNP ID:
sf1010464362(Gbrowse)
Chromosome: chr10 Position: 10464362 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 93.66% | 6.34% |
| All Indica | 790 | 96.20% | 3.80% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 65 | 26.15% | 73.85% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010464362 | T->A | INTERGENIC | None |