Detailed information of SNP:
|
SNP ID:
sf1010469347(Gbrowse)
Chromosome: chr10 Position: 10469347 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 66.76% | 33.24% |
| All Indica | 793 | 93.32% | 6.68% |
| All Japonica | 488 | 19.67% | 80.33% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 92.68% | 7.32% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 329 | 16.72% | 83.28% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 65 | 24.62% | 75.38% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010469347 | T->C | INTERGENIC | None |