Detailed information of SNP:
|
SNP ID:
sf1010470551(Gbrowse)
Chromosome: chr10 Position: 10470551 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 66.17% | 33.83% |
| All Indica | 725 | 39.45% | 60.55% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 336 | 37.80% | 62.20% |
| Indica II | 201 | 42.29% | 57.71% |
| Indica Intermediate | 188 | 39.36% | 60.64% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010470551 | C->T | INTERGENIC | None |