Detailed information of SNP:
|
SNP ID:
sf1010473152(Gbrowse)
Chromosome: chr10 Position: 10473152 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 51.36% | 48.64% |
| All Indica | 757 | 25.36% | 74.64% |
| All Japonica | 491 | 95.11% | 4.89% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 349 | 30.95% | 69.05% |
| Indica II | 206 | 20.87% | 79.13% |
| Indica Intermediate | 202 | 20.30% | 79.70% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010473152 | C->T | INTERGENIC | None |