Detailed information of SNP:
|
SNP ID:
sf1010476515(Gbrowse)
Chromosome: chr10 Position: 10476515 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 96.17% | 3.83% |
| All Indica | 768 | 93.88% | 6.12% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 367 | 96.46% | 3.54% |
| Indica II | 203 | 92.12% | 7.88% |
| Indica Intermediate | 198 | 90.91% | 9.09% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010476515 | C->T | LOC_Os10g20794(LOC_Os10g20794.1) | Non-Synonymous SNP |