Detailed information of SNP:
|
SNP ID:
sf1010476930(Gbrowse)
Chromosome: chr10 Position: 10476930 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 50.76% | 49.24% |
| All Indica | 767 | 71.19% | 28.81% |
| All Japonica | 490 | 13.06% | 86.94% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 359 | 65.74% | 34.26% |
| Indica II | 205 | 79.51% | 20.49% |
| Indica Intermediate | 203 | 72.41% | 27.59% |
| Temperate Japonica | 331 | 12.39% | 87.61% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010476930 | A->G | LOC_Os10g20794(LOC_Os10g20794.1) | INTRON |