Detailed information of SNP:
|
SNP ID:
sf1010483359(Gbrowse)
Chromosome: chr10 Position: 10483359 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1347 | 57.09% | 42.91% |
| All Indica | 745 | 35.44% | 64.56% |
| All Japonica | 488 | 93.03% | 6.97% |
| Aus | 61 | 32.79% | 67.21% |
| Indica I | 339 | 39.23% | 60.77% |
| Indica II | 205 | 30.24% | 69.76% |
| Indica Intermediate | 201 | 34.33% | 65.67% |
| Temperate Japonica | 329 | 96.05% | 3.95% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010483359 | A->G | LOC_Os10g20810(LOC_Os10g20810.1) | Non-Synonymous SNP |