Detailed information of SNP:
|
SNP ID:
sf1010493079(Gbrowse)
Chromosome: chr10 Position: 10493079 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 86.54% | 13.46% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010493079 | A->T | INTERGENIC | None |