Detailed information of SNP:
|
SNP ID:
sf1010494184(Gbrowse)
Chromosome: chr10 Position: 10494184 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.56% | 43.44% |
| All Indica | 799 | 86.86% | 13.14% |
| All Japonica | 496 | 17.94% | 82.06% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 20.00% | 80.00% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010494184 | A->T | INTERGENIC | None |