Detailed information of SNP:
|
SNP ID:
sf1010496141(Gbrowse)
Chromosome: chr10 Position: 10496141 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 81.78% | 18.22% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 496 | 70.97% | 29.03% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 77.54% | 22.46% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010496141 | C->T | INTERGENIC | None |