Detailed information of SNP:
|
SNP ID:
sf1010496888(Gbrowse)
Chromosome: chr10 Position: 10496888 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1356 | 96.98% | 3.02% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 435 | 90.80% | 9.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 87.09% | 12.91% |
| Tropical Japonica | 71 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010496888 | G->A | INTERGENIC | None |