Detailed information of SNP:
|
SNP ID:
sf1010500876(Gbrowse)
Chromosome: chr10 Position: 10500876 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 86.16% | 13.84% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 419 | 58.71% | 41.29% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 281 | 51.25% | 48.75% |
| Tropical Japonica | 74 | 95.95% | 4.05% |
| Japonica Intermediate | 64 | 48.44% | 51.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010500876 | A->G | LOC_Os10g20860(LOC_Os10g20860.1) | INTRON |