Detailed information of SNP:
|
SNP ID:
sf1010503221(Gbrowse)
Chromosome: chr10 Position: 10503221 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 58.43% | 41.57% |
| All Indica | 795 | 87.42% | 12.58% |
| All Japonica | 495 | 19.39% | 80.61% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010503221 | T->C | INTERGENIC | None |