Detailed information of SNP:
|
SNP ID:
sf1010504497(Gbrowse)
Chromosome: chr10 Position: 10504497 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 68.74% | 31.26% |
| All Indica | 797 | 94.48% | 5.52% |
| All Japonica | 495 | 30.30% | 69.70% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 27.76% | 72.24% |
| Tropical Japonica | 93 | 22.58% | 77.42% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010504497 | A->C | INTERGENIC | None |