Detailed information of SNP:
|
SNP ID:
sf1010505287(Gbrowse)
Chromosome: chr10 Position: 10505287 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 95.01% | 4.99% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 483 | 85.92% | 14.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 82.57% | 17.43% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 62 | 90.32% | 9.68% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010505287 | C->T | INTERGENIC | None |