Detailed information of SNP:
|
SNP ID:
sf1010505607(Gbrowse)
Chromosome: chr10 Position: 10505607 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 66.71% | 33.29% |
| All Indica | 793 | 93.06% | 6.94% |
| All Japonica | 497 | 19.92% | 80.08% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 20.90% | 79.10% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010505607 | T->C | INTERGENIC | None |