Detailed information of SNP:
|
SNP ID:
sf1010535612(Gbrowse)
Chromosome: chr10 Position: 10535612 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 52.92% | 47.08% |
| All Indica | 786 | 18.07% | 81.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 9.95% | 90.05% |
| Indica II | 209 | 22.01% | 77.99% |
| Indica Intermediate | 205 | 28.78% | 71.22% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010535612 | G->T | LOC_Os10g20960(LOC_Os10g20960.1) | INTRON |