Detailed information of SNP:
|
SNP ID:
sf1010547159(Gbrowse)
Chromosome: chr10 Position: 10547159 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 97.51% | 2.49% |
| All Indica | 786 | 95.67% | 4.33% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 208 | 92.31% | 7.69% |
| Indica Intermediate | 204 | 92.65% | 7.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010547159 | T->C | LOC_Os10g20970(LOC_Os10g20970.1) | Non-Synonymous SNP |