Detailed information of SNP:
|
SNP ID:
sf1010580984(Gbrowse)
Chromosome: chr10 Position: 10580984 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.03% | 43.97% |
| All Indica | 799 | 35.67% | 64.33% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 25.60% | 74.40% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010580984 | T->A | INTERGENIC | None |